Status
[June 2025] [December 2023] The genome sequence of Cenococcum geophilum was not determined by the JGI.
The genome sequence was assembled from PacBio HiFi sequencing reads to chromosome level using hifiasm v.0.16.1, Hi-C sequencing was then used to improve the contiguity of the draft genome assembly using the Proximo Hi-C 4.0 Kit developed at Phase Genomics (Seattle, USA).
The genome was provided by WSL on November 2022.
The annotation was done by Emmanuelle Morin of INRAE using the JGI Annotation Pipeline.
This copy of the genome does not include the mitochondrial chromosome or genes.
Summary statistics for the Cenococcum geophilum 1.058 v3.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 178.54 |
| Sequencing read coverage depth | 40x |
| # of contigs | 10 |
| # of scaffolds | 10 |
| # of scaffolds >= 2Kbp | 10 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 27.58 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 33.66, 28.62, 27.58 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 198339292 | 191720018 | 96.7% |
| Other | Cenge1058_1_RNA_contigs | 116001 | 54391 | 46.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1729 | 1490 |
| transcript | 1534 | 1293 |
| exon | 466 | 259 |
| intron | 87 | 60 |
| description: | ||
| protein length (aa) | 444 | 352 |
| exons per gene | 3.29 | 3 |
| # of gene models | 14145 |
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes
Funding
This project was not sequenced at the JGI.
