Info • Sparassis latifolia CCMJ1100 v1.0

Status

[November 2016] The Sparassis latifolia CCMJ1100 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Sparassis latifolia v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.66
Sequencing read coverage depth 74.16x
# of contigs 184
# of scaffolds 184
# of scaffolds >= 2Kbp 181
Scaffold N50 33
Scaffold L50 (Mbp) 0.35
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.92, 0.88, 0.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61227 58811 96.1%
Ests est.fasta 63455796 61682229 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1726 1440
transcript 1397 1152
exon 238 149
intron 70 58
description:
protein length (aa) 411 329
exons per gene 5.87 5
# of gene models 12815


Collaborators

Shu Lili, Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi

Joseph W. Spatafora, Oregon State University

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mondo SJ, He G, Sharma A, Ciobanu D, Riley R, Andreopoulos WB, Lipzen A, Kuo A, LaButti K, Pangilinan J, Salamov A, Salamon H, Shu L, Gladden J, Magnuson J, Aime MC, O'Malley R, Grigoriev IV
Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes.
iScience. 2025 May 16;28(5):112472. doi: 10.1016/j.isci.2025.112472

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.