Status
[April 2024] The Dicrateria rotunda RCC4501 v1.0 genome assembly was sequenced with PacBio, assembled with HiFiAsm, and annotated with the JGI Annotation Pipeline. The mitochondrial and chloroplast assemblies were assembled separately and are available in the downloads section. This annotation release includes JGI transcriptomics data from Illumina RNA-seq libraries, assembled with Trinity, and PacBio Iso-Seq CCS.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 86.90 |
| Sequencing read coverage depth | 21.75x |
| # of contigs | 296 |
| # of scaffolds | 296 |
| # of scaffolds >= 2Kbp | 296 |
| Scaffold N50 | 55 |
| Scaffold L50 (Mbp) | 0.48 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.77, 1.48, 1.43 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 388467290 | 382175902 | 98.4% |
| Other | IsoSeq_hq_reads | 142207 | 137571 | 96.7% |
| Other | RNAseq_contigs | 95449 | 85442 | 89.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1719 | 1374 |
| transcript | 1424 | 1206 |
| exon | 608 | 435 |
| intron | 222 | 155 |
| description: | ||
| protein length (aa) | 391 | 318 |
| exons per gene | 2.34 | 2 |
| # of gene models | 35250 |
Collaborators
- Betsy Read, California State University, San Marcos
- Richard Dorrell, Institut de Biologie, Sorbonne Université (siège), Paris, France
Links
- JGI EcoGroup Portals: Algae Arctic_algae Psychrophilic_algae Phytoplankton Oceanic Phytoplankton
- JGI PhyloGroup Portals: Haptophyta Prymnesiophyceae Prymnesiales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
